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degli Studi dell’Insubria

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Basic Next Generation Sequencing (NGS) procedures

10-13 febbraio 2025
Il corso si terrà in italiano e si svolgerà in modalità telematica

Orario delle lezioni: 9-12

 

programma

  • Introduction & overview of NGS (RNA and DNA sequencing) (lesson)
  • Introduction to Linux and R and command line interface (lesson/practical)
  • NGS data format (FASTA, FASTQ, SAM, BAM, GTF)
  • RNASeq Analysis Workflow and planning (Quality Control, Gene expression
  • ChIPSeq workflow – optional – (Alignment, Peak calling, downstream analyses)
  • Public available resources
  • Single-cell Next Generation approaches (lesson)
  • Single-cell RNASeq Analysis Workflow and planning (Quality Control, Alignment, Gene expression quantification, Differential expression analysis) (lesson/practical session)
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DOCENTE:

Roberta Carriero

She’s an expert in computational biology, with a strong background in the analysis of big data. Her education includes a biological training addressed to the specialization in bioinformatics. She has been working in the field of bioinformatics for 9 years in Italy, with a period of training abroad. She trained for 5 years in the laboratory of Computational Biology at CNR of Pavia (Italy), spending a period in Tel Aviv at Sackler Medical School in the lab of Prof. Gil Ast. She developed skills in the field of transcriptomics and epigenetics, contributing to the analysis of RNA-seq and ChIP-seq data in different models of DNA damage response in human. During the period in Israel, she expanded her skills in the field of transcriptomics, focusing on the analysis of alternative splicing events in RNA-seq. In 2017 she joined the group of Prof. Mantovani at Humanitas (Milan) where she contributed to different projects related to cancer and immune system, especially in the transcriptomic field at single-cell level. She is currently part of the Bioinformatics Unit at Humanitas, where she supervised different research projects in the field of oncoimmunology.

 

costo

Il costo di partecipazione è:

  • € 230 + IVA* entro il 25 gennaio
  • € 330 + IVA* dopo il 25 gennaio

*In caso di esenzione IVA, allegare documentazione in fase di iscrizione

come partecipare

Per partecipare al corso è sufficiente compilare il form sottostante, al raggiungimento del numero minimo di partecipanti, verrà inviata una mail con un link per il completamento della registrazione ed il pagamento.